Description

homeobox D8 [Source:HGNC Symbol;Acc:HGNC:5139]

Synonyms

HOX4, HOX4E

INSDC coordinates

chromosome:GRCh38:CM000664.2:176129694:176132695:1

About this gene

This gene has 4 transcripts (splice variants), 41 orthologues, 15 paralogues, is a member of 1 Ensembl protein family and is associated with 34 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HOXD8-001ENST000003131731917290aaENSP00000315949
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2268P13378 NM_019558
NP_062458
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
HOXD8-002ENST000004290171608106aaENSP00000406045
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56149A0A0A0MSX5 NM_001199747
NP_001186676
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HOXD8-003ENST000004505101268289aaENSP00000409026
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56148P13378 NM_001199746
NP_001186675
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
HOXD8-004ENST000005449991235186aaENSP00000437431
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A0MTF4 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Gene-based displays