Description

cadherin 2, type 1, N-cadherin (neuronal) [Source:HGNC Symbol;Acc:HGNC:1759]

Synonyms

CD325, CDHN, NCAD

Location
INSDC coordinates

chromosome:GRCh38:CM000680.2:27950966:28177446:1

About this gene

This gene has 5 transcripts (splice variants), 72 orthologues, 13 paralogues, is a member of 2 Ensembl protein families and is associated with 261 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CDH2-001ENST000002691414332906aaENSP00000269141
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11891A0A024RC42 P19022 NM_001792
NP_001783
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CDH2-003ENST000003993803737875aaENSP00000382312
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P19022 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CDH2-002ENST00000418492740191aaENSP00000411360
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J8J8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CDH2-005ENST00000430882610120aaENSP00000412120
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J126 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CDH2-004ENST0000041387856373aaENSP00000414269
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JMH2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays