Description

visinin-like 1 [Source:HGNC Symbol;Acc:HGNC:12722]

Synonyms

HLP3, HPCAL3, HUVISL1, VILIP, VILIP-1

Location
INSDC coordinates

chromosome:GRCh38:CM000664.2:17539126:17657018:1

Transcripts

This gene has 6 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
VSNL1-002ENST000004063972725191 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1689E7ER47 E9PE24 P62760
Q4ZFX3 Q53RT2
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
VSNL1-001ENST000002951561892191 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1689E7ER47 E9PE24 P62760
Q4ZFX3 Q53RT2
NM_003385
NP_003376
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
VSNL1-003ENST00000404666992191 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1689E7ER47 E9PE24 P62760
Q4ZFX3 Q53RT2
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
VSNL1-004ENST00000457525576118 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7ER47 E9PE24 Q53RT2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VSNL1-005ENST00000451533562104 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PE24 Q53RT2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VSNL1-006ENST00000483921561No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays