Description

ventral anterior homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12660]

INSDC coordinates

chromosome:GRCh38:CM000672.2:117128521:117138301:1

About this gene

This gene has 2 transcripts (splice variants), 56 orthologues, 4 paralogues, is a member of 1 Ensembl protein family and is associated with 1 phenotype.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
VAX1-002ENST000002779054494186aaENSP00000277905
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7597Q5SQQ9 NM_199131
NP_954582
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VAX1-001ENST000003692061723334aaENSP00000358207
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44483Q5SQQ9 NM_001112704
NP_001106175
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays