Description

glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]

Synonyms

DGSX, OCI-5, SDYS, SGB, SGBS, SGBS1

INSDC coordinates

chromosome:GRCh38:CM000685.2:133535745:133985895:1

About this gene

This gene has 4 transcripts (splice variants), 59 orthologues, 5 paralogues, is a member of 1 Ensembl protein family and is associated with 3 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GPC3-001ENST000003708182568580aaENSP00000359854
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14638I6QTG3 P51654 NM_001164618
NM_004484
NP_001158090
NP_004475
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GPC3-201ENST000003942992379603aaENSP00000377836
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55496P51654 NM_001164617
NP_001158089
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
GPC3-003ENST000006310571581526aaENSP00000486325
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001164619
NP_001158091
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
GPC3-002ENST00000406757836256aaENSP00000385307
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y3U6 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays