Description

thyroid hormone receptor, alpha [Source:HGNC Symbol;Acc:HGNC:11796]

Synonyms

AR7, EAR-7.1/EAR-7.2, ERBA, ERBA1, NR1A1, THRA1, THRA2, THRA3

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:40058290:40093867:1

Transcripts



This gene has 10 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
THRA-002ENST000004505254895410 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42316J3KTF3 J3QR26 J3QRA9
J3QRW5 P10827 Q6FH41
Q6LDR0
NM_199334
NP_955366
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
THRA-001ENST000002646372538490 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11360J3KTF3 J3QR26 J3QRA9
J3QRW5 P10827
NM_003250
NP_003241
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
THRA-005ENST000005849852421451 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58546J3KTF3 J3QR26 J3QRA9
J3QRW5 P10827
NM_001190918
NP_001177847
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
THRA-003ENST000003941212260490 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11360J3KTF3 J3QR26 J3QRA9
J3QRW5 P10827
NM_001190919
NP_001177848
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
THRA-006ENST000005462431909410 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42316J3KTF3 J3QR26 J3QRA9
J3QRW5 P10827 Q6FH41
Q6LDR0
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
THRA-009ENST0000057821890785 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3KTF3 J3QR26 J3QRA9
J3QRW5
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

THRA-007ENST0000057728858131 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QR26 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

THRA-008ENST0000058504757472 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3KTF3 J3QR26 J3QRW5
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

THRA-010ENST0000057748656357 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QR26 J3QRW5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

THRA-011ENST00000577637677No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays