Description

peroxiredoxin 4 [Source:HGNC Symbol;Acc:HGNC:17169]

Synonyms

AOE37-2

Location
INSDC coordinates

chromosome:GRCh38:CM000685.2:23664262:23686399:1

About this gene

This gene has 5 transcripts (splice variants), 63 orthologues, 3 paralogues, is a member of 1 Ensembl protein family and is associated with 22 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PRDX4-001ENST000003793411005271aaENSP00000368646
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14206Q13162 V9HW63 NM_006406
NP_006397
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PRDX4-004ENST00000379331852186aaENSP00000368635
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A6NG45 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDX4-002ENST00000379349815185aaENSP00000368654
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A6NJJ0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRDX4-005ENST00000439422554161aaENSP00000413736
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C3T4 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRDX4-003ENST00000495599632No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays