Description

homeobox B8 [Source:HGNC Symbol;Acc:HGNC:5119]

Synonyms

HOX2, HOX2D

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:48611377:48614939:1

About this gene

This gene has 3 transcripts (splice variants), 45 orthologues, 15 paralogues, is a member of 1 Ensembl protein family and is associated with 45 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HOXB8-001ENST000002391441823243aaENSP00000239144
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11533P17481 NM_024016
NP_076921
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HOXB8-002ENST00000576562743242aaENSP00000460659
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L3R1 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HOXB8-003ENST00000498634502128aaENSP00000460254
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L383 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays