Description

interferon regulatory factor 6 [Source:HGNC Symbol;Acc:HGNC:6121]

Synonyms

LPS, OFC6, VWS, VWS1

INSDC coordinates

chromosome:GRCh38:CM000663.2:209785623:209806175:1

About this gene

This gene has 4 transcripts (splice variants), 67 orthologues, 8 paralogues, is a member of 1 Ensembl protein family and is associated with 8 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
IRF6-001ENST000003670214306467aaENSP00000355988
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1492G0Z349 O14896 NM_006147
NP_006138
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
IRF6-201ENST000005428544256372aaENSP00000440532
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55681O14896 NM_001206696
NP_001193625
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
IRF6-002ENST000004563141027276aaENSP00000403855
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1AJU4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

IRF6-003ENST00000464698596No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays