Description

solute carrier family 6 (neurotransmitter transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11050]

Synonyms

5-HTT, HTT, OCD1, SERT1

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:30194319:30236002:1

Transcripts



This gene has 5 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SLC6A4-201ENST000002617076604630 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11256B3VRQ0 B3VRQ5 B3VRR0
B3VRR5 B3VRS0 B3VRS5
B3VRU0 B3VRU5 B3VRV0
B3VRV5 B3VRW0 J3KPR9
P31645 Q9NYN7 SLC6A4-201
NM_001045
NP_001036
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI3APPRIS candidate principal isoform (CCDS) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
SLC6A4-002ENST000004017666543630 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11256B3VRQ0 B3VRQ5 B3VRR0
B3VRR5 B3VRS0 B3VRS5
B3VRU0 B3VRU5 B3VRV0
B3VRV5 B3VRW0 J3KPR9
P31645 Q9NYN7 SLC6A4-002
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI3APPRIS candidate principal isoform (CCDS) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
SLC6A4-001ENST000003948212160618 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B3VRQ0 B3VRQ5 B3VRR0
B3VRR5 B3VRS0 B3VRS5
B3VRU0 B3VRV0 B3VRV5
B3VRW0 J3KPR9 Q9NYN7
SLC6A4-001
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS CIAPPRIS candidate principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
SLC6A4-003ENST00000579221106972 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-B3VRQ0 SLC6A4-003 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SLC6A4-004ENST00000578609566No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
-SLC6A4-004 -TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays