Description

platelet-derived growth factor beta polypeptide [Source:HGNC Symbol;Acc:HGNC:8800]

Synonyms

SIS, SSV

Location
INSDC coordinates

chromosome:GRCh38:CM000684.2:39223359:39244751:1

About this gene

This gene has 4 transcripts (splice variants), 70 orthologues, 1 paralogue, is a member of 1 Ensembl protein family and is associated with 5 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PDGFB-001ENST000003311633497241aaENSP00000330382
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13987P01127 NM_002608
NP_002599
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
PDGFB-002ENST000003815511125226aaENSP00000370963
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33650P01127 NM_033016
NP_148937
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
PDGFB-004ENST00000440375556136aaENSP00000405780
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A9UJN9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PDGFB-003ENST00000455790554144aaENSP00000402306
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A9UJP0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Gene-based displays