Description

collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]

Synonyms

DKFZp434K0621

INSDC coordinates

chromosome:GRCh38:CM000667.2:178237618:178590555:1

About this gene

This gene has 3 transcripts (splice variants), 54 orthologues, 9 paralogues, is a member of 1 Ensembl protein family and is associated with 100 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
COL23A1-001ENST000003906543061540aaENSP00000375069
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4436Q86Y22 NM_173465
NP_775736
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

COL23A1-201ENST000004076222329393aaENSP00000385092
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A0MSD3 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL23A1-002ENST00000484750568No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays