Transcript: ENSDART00000079139.4 ctcf-201

Description

CCCTC-binding factor (zinc finger protein) [Source:ZFIN;Acc:ZDB-GENE-040624-5]

Location

Chromosome 18: 22,285,992-22,293,372 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 71 domains and features, is associated with 744 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056621.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079139.4	ctcf-201	4265	798aa	ENSDARP00000073595.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6JAA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181644.1	ctcf-204	6319	809aa	ENSDARP00000157452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000151922.2	ctcf-203	572	125aa	ENSDARP00000126345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151919.2	ctcf-202	253	53aa	ENSDARP00000126341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 4,265 bps, Translation length: 798 residues

Version

ENSDART00000079139.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000079139.4 ctcf-201

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Transcript: ENSDART00000079139.4 ctcf-201

Summary

About Us

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