Transcript: ENSDART00000164712.2 cobll1b-202

Description

cordon-bleu WH2 repeat protein-like 1b [Source:ZFIN;Acc:ZDB-GENE-120313-6]

Gene Synonyms

cobll1, sb:cb819, si:ch73-76o7.1

Location

Chromosome 9: 50,038,347-50,166,801 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 1436 variant alleles and maps to 61 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000102829.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000170352.2	cobll1b-203	2558	693aa	ENSDARP00000141677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N4SUG1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000164712.2	cobll1b-202	1426	305aa	ENSDARP00000132272.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N4STU5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000162990.2	cobll1b-201	1035	345aa	ENSDARP00000130304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N4STP5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,426 bps, Translation length: 305 residues

Version

ENSDART00000164712.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000164712.2 cobll1b-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000164712.2 cobll1b-202

Summary

About Us

Get help

Our sister sites

Follow us