Transcript: ENSDART00000172337.2 rhot1a-205

Description

ras homolog family member T1a [Source:ZFIN;Acc:ZDB-GENE-030131-5354]

Location

Chromosome 3: 26,294,161-26,319,758 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 19 domains and features, is associated with 1 variant allele and maps to 309 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099996.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163500.3	rhot1a-203	3064	619aa	ENSDARP00000141563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NVC5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172337.2	rhot1a-205	2436	510aa	ENSDARP00000135168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000157648.2	rhot1a-201	780	260aa	ENSDARP00000139254.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000167408.2	rhot1a-204	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000162673.2	rhot1a-202	738	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,436 bps, Translation length: 510 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000172337.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000172337.2 rhot1a-205

Summary

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Transcript: ENSDART00000172337.2 rhot1a-205

Summary

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