Transcript: ENSDART00000173040.2 cstf2-204

Description

cleavage stimulation factor, 3' pre-RNA, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-031118-2]

Location

Chromosome 14: 41,361,858-41,369,629 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 548 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000090788.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000124532.4	cstf2-201	1719	488aa	ENSDARP00000110939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000169247.2	cstf2-203	1681	508aa	ENSDARP00000129952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4I9I2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000125016.3	cstf2-202	1424	339aa	ENSDARP00000106787.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000173040.2	cstf2-204	856	177aa	ENSDARP00000142205.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 856 bps, Translation length: 177 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000173040.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000173040.2 cstf2-204

Summary

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Transcript: ENSDART00000173040.2 cstf2-204

Summary

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