Transcript: ENSDART00000146125.1 ttc3-204

Description

tetratricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-090313-3]

Gene Synonyms

si:ch1073-446e18.3

Location

About this transcript

This transcript has 27 exons, is annotated with 30 domains and features, is associated with 217 variant alleles and maps to 145 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000127228.3	ttc3-202	5085	1694aa	ENSDARP00000109432.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EYR3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146125.1	ttc3-204	3912	1168aa	ENSDARP00000114730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QFP2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145716.1	ttc3-203	884	295aa	ENSDARP00000117336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QP67	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000105698.3	ttc3-201	413	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 3,912 bps, Translation length: 1,168 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000146125.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.