Transcript: ENSDART00000138363.2 lsm5-203

Description

LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]

Gene Synonyms

zgc:171959

Location

About this transcript

This transcript has 4 exons, is associated with 67 variant alleles and maps to 51 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105903.5	lsm5-201	739	91aa	ENSDARP00000096681.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7E2L8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134356.3	lsm5-202	516	62aa	ENSDARP00000121634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFA0	-
ENSDART00000139786.2	lsm5-204	478	62aa	ENSDARP00000116972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFA0	-
ENSDART00000138363.2	lsm5-203	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 758 bps,

Version

ENSDART00000138363.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.