Transcript: ENSDART00000140455.2 ccm2l-202

Description

CCM2 like scaffold protein [Source:ZFIN;Acc:ZDB-GENE-090313-248]

Gene Synonyms

ccml2, si:dkey-223d9.2

Location

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 342 variant alleles and maps to 25 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000091899.6	ccm2l-201	4848	420aa	ENSDARP00000086332.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EYK9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144533.2	ccm2l-203	539	100aa	ENSDARP00000113989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QV14	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140455.2	ccm2l-202	463	146aa	ENSDARP00000122837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFQ0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 463 bps, Translation length: 146 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000140455.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.