Transcript: ENSDART00000142081.3 stra6l-205

Description

STRA6-like [Source:ZFIN;Acc:ZDB-GENE-070410-116]

Gene Synonyms

rbpr2, zgc:162946

Location

Chromosome 1: 12,177,266-12,190,943 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 15 domains and features, is associated with 391 variant alleles and maps to 200 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000062467.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000090380.5	stra6l-201	4826	609aa	ENSDARP00000084813.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCP7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142081.3	stra6l-205	2423	609aa	ENSDARP00000120240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCP7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146842.3	stra6l-206	947	234aa	ENSDARP00000113464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QJL6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132560.2	stra6l-202	605	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000136188.3	stra6l-203	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141894.2	stra6l-204	444	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 2,423 bps, Translation length: 609 residues

Version

ENSDART00000142081.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142081.3 stra6l-205

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Transcript: ENSDART00000142081.3 stra6l-205

Summary

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