Transcript: ENSDART00000133479.2 zgc:153901-202

Description

zgc:153901 [Source:ZFIN;Acc:ZDB-GENE-060929-820]

Location

About this transcript

This transcript has 6 exons, is associated with 281 variant alleles and maps to 142 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000090280.6	zgc:153901-201	1556	328aa	ENSDARP00000084713.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8M2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145419.3	zgc:153901-203	869	275aa	ENSDARP00000120323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGU1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145891.3	zgc:153901-204	643	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000133479.2	zgc:153901-202	1608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,608 bps,

Version

ENSDART00000133479.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.