Transcript: ENSDART00000141770.3 trpc5b-201

Description

transient receptor potential cation channel, subfamily C, member 5b [Source:ZFIN;Acc:ZDB-GENE-091112-24]

Gene Synonyms

si:dkeyp-81e1.5

Location

About this transcript

This transcript has 5 exons, is associated with 311 variant alleles and maps to 69 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158308.2	trpc5b-203	3072	1023aa	ENSDARP00000141684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148115.3	trpc5b-202	3596	1012aa	ENSDARP00000117094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QIL1	-
ENSDART00000141770.3	trpc5b-201	1748	428aa	ENSDARP00000113073.1	Nonsense mediated decay	F1R069	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,748 bps, Translation length: 428 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000141770.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.