Transcript: ENSDART00000140845.3 si:dkey-37g12.1-202

Description

si:dkey-37g12.1 [Source:ZFIN;Acc:ZDB-GENE-090312-145]

Location

Chromosome 1: 41,898,919-41,920,594 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 16 domains and features, is associated with 5 variant alleles and maps to 181 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000060264.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185887.1	si:dkey-37g12.1-203	7622	1063aa	ENSDARP00000149533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q8U2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000084735.6	si:dkey-37g12.1-201	7224	1028aa	ENSDARP00000079170.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R1B5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000140845.3	si:dkey-37g12.1-202	1491	497aa	ENSDARP00000122650.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NTU2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,491 bps, Translation length: 497 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000140845.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140845.3 si:dkey-37g12.1-202

Summary

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Transcript: ENSDART00000140845.3 si:dkey-37g12.1-202

Summary

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