Transcript: ENSDART00000083395.7 plod1a-201

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3165]

Gene Synonyms

fc95g08, fi18a05, ik:tdsubs_rzpd609-29b19, lh1, plod, plod1, wu:fc29c10, wu:fc95g08, wu:fi18a05, zgc:152876

Location

About this transcript

This transcript has 19 exons, is annotated with 10 domains and features, is associated with 727 variant alleles and maps to 201 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083395.7	plod1a-201	2767	730aa	ENSDARP00000077830.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WIN7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147159.2	plod1a-203	664	50aa	ENSDARP00000112909.1	Nonsense mediated decay	E9QCW2	-
ENSDART00000144254.2	plod1a-202	406	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,767 bps, Translation length: 730 residues

Version

ENSDART00000083395.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.