Transcript: ENSDART00000139090.2 arl6ip1-202

Description

ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]

Gene Synonyms

arl6ip, zgc:56593, zgc:77873

Location

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 9 variant alleles and maps to 107 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000058955.6	arl6ip1-201	1590	203aa	ENSDARP00000058954.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZWB4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139090.2	arl6ip1-202	615	160aa	ENSDARP00000120401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGB6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145382.2	arl6ip1-203	781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 615 bps, Translation length: 160 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000139090.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.