Transcript: ENSDART00000143048.4 lmo7b-205

Description

LIM domain 7b [Source:ZFIN;Acc:ZDB-GENE-060825-242]

Location

About this transcript

This transcript has 27 exons, is annotated with 39 domains and features, is associated with 818 variant alleles and maps to 316 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140515.5	lmo7b-204	6086	1384aa	ENSDARP00000115656.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NN15	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000143048.4	lmo7b-205	3975	1173aa	ENSDARP00000119254.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000083736.4	lmo7b-201	923	161aa	ENSDARP00000078171.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000132042.2	lmo7b-202	541	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000133543.2	lmo7b-203	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 3,975 bps, Translation length: 1,173 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000143048.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.