Transcript: ENSDART00000139832.3 tmem181-202

Description

transmembrane protein 181 [Source:ZFIN;Acc:ZDB-GENE-060503-309]

Gene Synonyms

si:ch211-222h17.5, si:ch211-51e12.4

Location

Chromosome 4: 359,970-367,982 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 699 variant alleles and maps to 41 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045910.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000103645.6	tmem181-201	2431	530aa	ENSDARP00000094421.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QYZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000163436.2	tmem181-204	2800	524aa	ENSDARP00000141130.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IYB4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000139832.3	tmem181-202	609	172aa	ENSDARP00000120429.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBR5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142225.3	tmem181-203	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 609 bps, Translation length: 172 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000139832.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000139832.3 tmem181-202

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Transcript: ENSDART00000139832.3 tmem181-202

Summary

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