Transcript: ENSDART00000173431.2 lemd1-210

Description

LEM domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-350]

Location

Chromosome 23: 18,033,121-18,057,926 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 389 variant alleles and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000040161.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000058742.6	lemd1-201	1476	285aa	ENSDARP00000058741.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHI6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173068.2	lemd1-203	1021	297aa	ENSDARP00000142311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000173230.2	lemd1-207	975	278aa	ENSDARP00000142059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172987.2	lemd1-202	871	254aa	ENSDARP00000142133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173135.2	lemd1-206	854	263aa	ENSDARP00000142219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173075.2	lemd1-204	804	239aa	ENSDARP00000142102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173385.2	lemd1-209	796	265aa	ENSDARP00000142569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000173102.2	lemd1-205	785	208aa	ENSDARP00000142548.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173431.2	lemd1-210	778	234aa	ENSDARP00000142608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173255.2	lemd1-208	650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 778 bps, Translation length: 234 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000173431.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000173431.2 lemd1-210

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Transcript: ENSDART00000173431.2 lemd1-210

Summary

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