Transcript: ENSDART00000044658.5 letmd1-201

Description

LETM1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-080723-8]

Gene Synonyms

zgc:194450, zgc:194455

Location

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 478 variant alleles and maps to 143 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000044658.5	letmd1-201	1403	362aa	ENSDARP00000044657.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133688.3	letmd1-202	584	178aa	ENSDARP00000115313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q868	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000146320.2	letmd1-203	538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,403 bps, Translation length: 362 residues

Version

ENSDART00000044658.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.