Transcript: ENSDART00000129917.4 pals2b-203

Description

protein associated with LIN7 2, MAGUK p55 family member b [Source:ZFIN;Acc:ZDB-GENE-040426-775]

Location

Chromosome 19: 20,083,718-20,093,341 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 306 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029761.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000043924.7	pals2b-201	2095	539aa	ENSDARP00000043923.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LW94	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000126173.3	pals2b-202	1835	539aa	ENSDARP00000108697.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LW94	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000129917.4	pals2b-203	497	93aa	ENSDARP00000125678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151319.2	pals2b-204	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 497 bps, Translation length: 93 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000129917.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000129917.4 pals2b-203

Summary

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Transcript: ENSDART00000129917.4 pals2b-203

Summary

About Us

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