Transcript: ENSDART00000102584.5 snrpa1-201

Description

small nuclear ribonucleoprotein polypeptide A' [Source:ZFIN;Acc:ZDB-GENE-041114-82]

Gene Synonyms

im:7142962, zgc:101832

Location

About this transcript

This transcript has 8 exons, is associated with 380 variant alleles and maps to 145 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000128530.4	snrpa1-202	1115	277aa	ENSDARP00000107467.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R300	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000102584.5	snrpa1-201	1001	173aa	ENSDARP00000093360.3	Nonsense mediated decay	F6P9M5	-
ENSDART00000149146.2	snrpa1-204	822	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000148818.3	snrpa1-203	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,001 bps, Translation length: 173 residues

Version

ENSDART00000102584.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.