Transcript: ENSDART00000186747.1 valopa-202

Description

vertebrate ancient long opsin a [Source:ZFIN;Acc:ZDB-GENE-000427-4]

Gene Synonyms

(VA)-opsin, (VAL)-opsin, va1, valop

Location

About this transcript

This transcript has 4 exons, is annotated with 30 domains and features, is associated with 522 variant alleles and maps to 78 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000097731.4	valopa-201	1845	377aa	ENSDARP00000088502.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9IB88	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000186747.1	valopa-202	933	310aa	ENSDARP00000148355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9IB87	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 933 bps, Translation length: 310 residues

Version

ENSDART00000186747.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.