Transcript: ENSDART00000132937.2 efcab7-202

Description

EF-hand calcium binding domain 7 [Source:ZFIN;Acc:ZDB-GENE-040625-115]

Gene Synonyms

fc67a03, wu:fc67a03, zgc:86807

Location

Chromosome 6: 32,029,913-32,034,640 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 278 variant alleles and maps to 96 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000020279.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139055.2	efcab7-204	2377	606aa	ENSDARP00000120948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5Y8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000016629.7	efcab7-201	2333	603aa	ENSDARP00000014030.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QTG3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000132937.2	efcab7-202	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000137013.2	efcab7-203	760	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 799 bps,

Version

ENSDART00000132937.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000132937.2 efcab7-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000132937.2 efcab7-202

Summary

About Us

Get help

Our sister sites

Follow us