Transcript: ENSDART00000151248.4 col12a1b-203

Description

collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]

Gene Synonyms

si:ch211-106k22.1

Location

About this transcript

This transcript has 43 exons, is annotated with 122 domains and features, is associated with 1766 variant alleles and maps to 144 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000025926.9	col12a1b-201	10932	3643aa	ENSDARP00000009356.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FG81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151248.4	col12a1b-203	7011	2208aa	ENSDARP00000126085.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3IT32	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151239.2	col12a1b-202	721	241aa	ENSDARP00000125901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ISL8	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 43, Coding exons: 43, Transcript length: 7,011 bps, Translation length: 2,208 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000151248.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.