Transcript: ENSDART00000062681.7 nop56-201

Description

NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]

Gene Synonyms

NOP56, nol5a

Location

Chromosome 21: 11,959,300-11,964,686 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 270 variant alleles and maps to 104 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000012820.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114524.5	nop56-203	2039	548aa	ENSDARP00000099474.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DRE5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000102433.6	nop56-202	1134	142aa	ENSDARP00000093210.4	Nonsense mediated decay	E7EZW9	-
ENSDART00000062681.7	nop56-201	836	110aa	ENSDARP00000062680.6	Nonsense mediated decay	G1K2N3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000123335.4	nop56-204	1014	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000145194.2	nop56-207	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134902.2	nop56-205	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000135696.3	nop56-206	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 836 bps, Translation length: 110 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000062681.7

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000062681.7 nop56-201

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Transcript: ENSDART00000062681.7 nop56-201

Summary

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