Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: hoxa1a ENSDARG00000104307

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Description

homeobox A1a [Source:NCBI gene;Acc:58051]

Gene Synonyms

Hox-a1, id:ibd3526, z-4

Location

Chromosome 19: 19,786,117-19,787,752 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 2 transcripts (splice variants), 200 orthologues and 53 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167757.2	hoxa1a-202	1441	329aa	ENSDARP00000133272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DHB1 Q98SI1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000163546.2	hoxa1a-201	885	294aa	ENSDARP00000133812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q98SI1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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