Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: tmem39a ENSDARG00000102746

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Description

transmembrane protein 39A [Source:ZFIN;Acc:ZDB-GENE-030131-1928]

Location

Chromosome 1: 39,313-44,565 reverse strand.

GRCz11:CM002885.2

About this gene

This gene has 8 transcripts (splice variants), 209 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000168091.1	tmem39a-204	2207	481aa	ENSDARP00000139614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171547.1	tmem39a-208	1472	259aa	ENSDARP00000137064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000164075.1	tmem39a-202	905	239aa	ENSDARP00000135294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000160050.1	tmem39a-201	521	111aa	ENSDARP00000130474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000168660.1	tmem39a-205	196	19aa	ENSDARP00000138450.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000165693.1	tmem39a-203	411	41aa	ENSDARP00000142019.1	Nonsense mediated decay	-
ENSDART00000169744.1	tmem39a-206	807	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000170183.1	tmem39a-207	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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