Gene: scn1laa ENSDARG00000086819

Description

sodium channel, voltage-gated, type I-like, alpha [Source:ZFIN;Acc:ZDB-GENE-040426-751]

Gene Synonyms

Nav1.1, scn1Laa, scn1a, unm_sa1674, zgc:158596, zgc:55600, zscn8

Location

Chromosome 9: 49,906,037-50,001,606 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 6 transcripts (splice variants), 81 orthologues, 32 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161648.3	scn1laa-203	6421	1955aa	ENSDARP00000137025.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUM7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170814.2	scn1laa-206	5868	1955aa	ENSDARP00000138437.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUM7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168514.2	scn1laa-205	2501	711aa	ENSDARP00000135245.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IM09	-
ENSDART00000167098.2	scn1laa-204	1255	407aa	ENSDARP00000133081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IHZ1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000123416.3	scn1laa-201	1053	304aa	ENSDARP00000105554.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FFV4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000161619.2	scn1laa-202	697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Gene: scn1laa ENSDARG00000086819

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Gene: scn1laa ENSDARG00000086819

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