Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: pdzrn3b ENSDARG00000073869

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Description

PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]

Location

Chromosome 6: 44,243,070-44,402,358 reverse strand.

GRCz11:CM002890.2

About this gene

This gene has 4 transcripts (splice variants), 202 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114330.4	pdzrn3b-201	4320	1053aa	ENSDARP00000101938.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FDW2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000193007.1	pdzrn3b-203	5753	1024aa	ENSDARP00000145553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000193603.1	pdzrn3b-204	5723	1014aa	ENSDARP00000154894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000157215.2	pdzrn3b-202	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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