Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: pcdh1a ENSDARG00000062720

.

Description

protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]

Gene Synonyms

si:dkey-18f22.3

Location

Chromosome 10: 20,920,364-21,054,059 reverse strand.

GRCz11:CM002894.2

About this gene

This gene has 3 transcripts (splice variants), 205 orthologues and 49 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139733.3	pcdh1a-203	4201	1190aa	ENSDARP00000120435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NJQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000091004.6	pcdh1a-201	6157	1018aa	ENSDARP00000085437.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F743	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134692.2	pcdh1a-202	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

.

Summary

.

.