Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: prpf38b ENSDARG00000053101

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Description

pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]

Location

Chromosome 2: 45,655,294-45,663,945 reverse strand.

GRCz11:CM002886.2

About this gene

This gene has 5 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000075080.6	prpf38b-201	2188	501aa	ENSDARP00000069565.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131872.2	prpf38b-202	1229	172aa	ENSDARP00000112649.1	Nonsense mediated decay	-
ENSDART00000133598.3	prpf38b-203	777	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000135665.2	prpf38b-204	777	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000137126.2	prpf38b-205	731	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

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Summary

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