Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: def6b ENSDARG00000044524

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Description

DEF6 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-110408-59]

Gene Synonyms

si:ch73-352p18.1

Location

Chromosome 22: 978,867-996,521 forward strand.

GRCz11:CM002906.2

About this gene

This gene has 3 transcripts (splice variants), 154 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000065377.7	def6b-201	4060	475aa	ENSDARP00000065376.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F1N0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000148981.2	def6b-202	1005	335aa	ENSDARP00000123694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5E4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149486.2	def6b-203	588	195aa	ENSDARP00000124073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3I3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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