Description
sphingomyelin phosphodiesterase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2672]
Location
Chromosome 21: 18,907,102-18,926,900 forward strand.
GRCz11:CM002905.2
About this gene
This gene has 10 transcripts (splice variants) and 202 orthologues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | Flags |
|---|---|---|---|---|---|---|
| ENSDART00000130519.4 | smpd4-202 | 3439 | 791aa | ENSDARP00000107263.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| ENSDART00000190175.1 | smpd4-209 | 3635 | 791aa | ENSDARP00000146929.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| ENSDART00000160185.3 | smpd4-208 | 3398 | 821aa | ENSDARP00000137006.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, |
| ENSDART00000017937.7 | smpd4-201 | 3386 | 791aa | ENSDARP00000022632.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| ENSDART00000191546.1 | smpd4-210 | 3386 | 791aa | ENSDARP00000157312.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| ENSDART00000147567.2 | smpd4-207 | 1362 | 454aa | ENSDARP00000122303.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, |
| ENSDART00000137143.2 | smpd4-204 | 596 | 87aa | ENSDARP00000112609.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, |
| ENSDART00000141659.2 | smpd4-205 | 638 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - |
| ENSDART00000133396.2 | smpd4-203 | 806 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| ENSDART00000144131.3 | smpd4-206 | 738 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
