Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: rbfox1 ENSDARG00000014746

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Description

RNA binding fox-1 homolog 1 [Source:ZFIN;Acc:ZDB-GENE-040927-11]

Location

Chromosome 3: 27,982,269-28,428,198 reverse strand.

GRCz11:CM002887.2

About this gene

This gene has 8 transcripts (splice variants), 179 orthologues, 4 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000122037.4	rbfox1-202	3190	373aa	ENSDARP00000107099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q642J5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000191573.1	rbfox1-208	4987	371aa	ENSDARP00000155158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165936.2	rbfox1-207	4963	368aa	ENSDARP00000138682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000150888.3	rbfox1-203	944	233aa	ENSDARP00000125654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151546.3	rbfox1-206	865	175aa	ENSDARP00000125695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151178.2	rbfox1-205	774	151aa	ENSDARP00000126220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151143.3	rbfox1-204	759	205aa	ENSDARP00000125806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000055534.6	rbfox1-201	662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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