Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sema6dl ENSDARG00000011533

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Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]

Gene Synonyms

si:ch211-278n20.1, zgc:112012

Location

Chromosome 18: 40,354,998-40,387,862 forward strand.

GRCz11:CM002902.2

About this gene

This gene has 6 transcripts (splice variants), 204 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000098791.5	sema6dl-202	3157	1018aa	ENSDARP00000089561.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KPS3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000049171.7	sema6dl-201	3100	999aa	ENSDARP00000049170.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KPS4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000130847.3	sema6dl-204	3057	1018aa	ENSDARP00000104837.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KPS3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000123661.4	sema6dl-203	3000	999aa	ENSDARP00000106275.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KPS4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000167134.2	sema6dl-206	1037	204aa	ENSDARP00000133345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q567I7	-
ENSDART00000136588.2	sema6dl-205	540	68aa	ENSDARP00000122771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSD1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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