Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:ch211-195d17.2 ENSDARG00000008119

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Description

si:ch211-195d17.2 [Source:ZFIN;Acc:ZDB-GENE-030131-513]

Gene Synonyms

THAP-E2F6 fusion gene, fb34f06, wu:fb34f06, zgc:136607

Location

Chromosome 20: 29,676,874-29,683,783 reverse strand.

GRCz11:CM002904.2

About this gene

This gene has 3 transcripts (splice variants), 263 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000130599.3	si:ch211-195d17.2-202	1412	313aa	ENSDARP00000106693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q29RF1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000131219.4	si:ch211-195d17.2-203	1583	406aa	ENSDARP00000121362.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TZC4	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000015928.10	si:ch211-195d17.2-201	1580	405aa	ENSDARP00000020835.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q565	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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