Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: pals1a ENSDARG00000006272

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Description

protein associated with LIN7 1, MAGUK p55 family member a [Source:ZFIN;Acc:ZDB-GENE-020712-1]

Location

Chromosome 17: 34,186,632-34,239,514 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 3 transcripts (splice variants), 211 orthologues, 15 paralogues and is associated with 110 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136167.2	pals1a-202	2903	703aa	ENSDARP00000123304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVF4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000014306.7	pals1a-201	3048	703aa	ENSDARP00000015684.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVF4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186775.1	pals1a-203	2421	703aa	ENSDARP00000151296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVF4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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