Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: lsm5 ENSDARG00000071573

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Description

LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene (formerly Entrezgene);Acc:563948]

Location

Chromosome 12: 13,331,526-13,337,037 reverse strand.

GRCz11:CM002896.2

About this gene

This gene has 4 transcripts (splice variants) and 249 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105903.5	lsm5-201	739	91aa	ENSDARP00000096681.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7E2L8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134356.3	lsm5-202	516	62aa	ENSDARP00000121634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000139786.2	lsm5-204	478	62aa	ENSDARP00000116972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000138363.2	lsm5-203	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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