Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Transcript: F52F12.1a.1

Description

Organic cation transporter 1 [Source:NCBI gene;Acc:172841]

Location

About this transcript

This transcript has 13 exons, is annotated with 22 domains and features and maps to 59 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F52F12.1a.1	-	1897	585aa	F52F12.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U539	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
F52F12.1b.1	-	1833	568aa	F52F12.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U539	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,897 bps, Translation length: 585 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9U539

Version

F52F12.1a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase