Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: Y39A3CL.5a.1

Description

Calpain catalytic domain-containing protein [Source:NCBI gene;Acc:175326]

Location

About this transcript

This transcript has 9 exons, is annotated with 22 domains and features and maps to 63 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
Y39A3CL.5a.1	-	2306	716aa	Y39A3CL.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IAA9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Y39A3CL.5b.1	-	1812	603aa	Y39A3CL.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IAA8	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,306 bps, Translation length: 716 residues

Version

Y39A3CL.5a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase